Welcome to DeepTrack 2.0’s documentation!

Starting with deeptrack

• Getting started
  • Installation
• Tutorials and notebooks
  • DeepTrack Basics
  • Advanced DeepTrack

Documentation

Documentation

• math
  • Classses
  • Module classes
    • Clip
    • NormalizeMinMax
• scatterers
  • Classes
  • Module classes
    • Ellipse
    • Ellipsoid
    • PointParticle
    • Scatterer
    • Sphere
• optics
  • Classes
  • Module classes
    • Brightfield
    • Fluorescence
    • IlluminationGradient
    • Microscope
    • Optics
  • Module functions
    • _create_volume
    • _get_position
• noises
  • Classes
  • Module classes
    • Add
    • Background
    • Gaussian
    • Noise
    • Offset
    • Poisson
• augmentations
  • Classes
  • Module classes
    • Augmentation
    • Crop
    • FlipDiagonal
    • FlipLR
    • FlipUD
    • PreLoad
• aberrations
  • Classes
  • Module classes
    • Aberration
    • Astigmatism
    • Defocus
    • GaussianApodization
    • HorizontalComa
    • HorizontalTilt
    • ObliqueAstigmatism
    • ObliqueTrefoil
    • Piston
    • SphericalAberration
    • Trefoil
    • VerticalComa
    • VerticalTilt
    • Zernike
• models
  • Classes
  • Module classes
    • Convolutional
    • ModelFeature
    • RNN
    • UNet
    • convolutional
    • rnn
    • unet
• losses
  • Functions
  • Module functions
    • deeptrack_loss_function
    • flatten
    • nd_binary_crossentropy
    • nd_kl_divergence
    • nd_mean_absolute_error
    • nd_mean_absolute_percentage_error
    • nd_mean_squared_error
    • nd_mean_squared_logarithmic_error
    • nd_poisson
    • nd_squared_hinge
    • sigmoid
    • weighted_crossentropy
• sequences
  • Classes
  • Functions
  • Module classes
    • Sequence
  • Module functions
    • Sequential
• utils
  • Functions
  • Module functions
    • as_list
    • get_kwarg_names
    • hasmethod
    • isiterable
• properties
  • Classes
  • Module classes
    • Property
    • PropertyDict
    • SequentialProperty
• features
  • Classes
  • Module classes
    • Branch
    • ConditionalSetFeature
    • ConditionalSetProperty
    • Duplicate
    • Feature
    • Label
    • Lambda
    • LoadImage
    • Probability
    • StructuralFeature
• image
  • CLASSES
  • Functions
  • Module classes
    • Image
  • Module functions
    • pad_image_to_fft