Index

_

__distributed__ (deeptrack.features.Feature attribute) __list_merge_strategy__ (deeptrack.features.Feature attribute)

__property_memorability__ (deeptrack.features.Feature attribute) _create_volume() (in module deeptrack.optics) _get_position() (in module deeptrack.optics)

A

Aberration (class in deeptrack.aberrations) Add (class in deeptrack.noises) append() (deeptrack.image.Image method)

as_list() (in module deeptrack.utils) Astigmatism (class in deeptrack.aberrations) Augmentation (class in deeptrack.augmentations)

B

Background (in module deeptrack.noises)

Branch (class in deeptrack.features) Brightfield (class in deeptrack.optics)

C

call() (deeptrack.models.ModelFeature method) Clip (class in deeptrack.math) ConditionalSetFeature (class in deeptrack.features) ConditionalSetProperty (class in deeptrack.features)

Convolutional (class in deeptrack.models) convolutional (in module deeptrack.models) Crop (class in deeptrack.augmentations) current_value (deeptrack.properties.Property attribute) current_value_dict() (deeptrack.properties.PropertyDict method)

D

deeptrack.aberrations (module) deeptrack.augmentations (module) deeptrack.features (module) deeptrack.generators (module) deeptrack.image (module) deeptrack.losses (module) deeptrack.math (module) deeptrack.models (module)

deeptrack.noises (module) deeptrack.optics (module) deeptrack.properties (module) deeptrack.scatterers (module) deeptrack.sequences (module) deeptrack.utils (module) deeptrack_loss_function() (in module deeptrack.losses) Defocus (class in deeptrack.aberrations) Duplicate (class in deeptrack.features)

E

Ellipse (class in deeptrack.scatterers)

Ellipsoid (class in deeptrack.scatterers)

F

Feature (class in deeptrack.features) feature (deeptrack.sequences.Sequence attribute) flatten() (in module deeptrack.losses)

FlipDiagonal (class in deeptrack.augmentations) FlipLR (class in deeptrack.augmentations) FlipUD (class in deeptrack.augmentations) Fluorescence (class in deeptrack.optics)

G

Gaussian (class in deeptrack.noises) GaussianApodization (class in deeptrack.aberrations) generate() (deeptrack.generators.Generator method) Generator (class in deeptrack.generators) get() (deeptrack.aberrations.GaussianApodization method) (deeptrack.aberrations.Zernike method) (deeptrack.augmentations.Crop method) (deeptrack.augmentations.FlipDiagonal method) (deeptrack.augmentations.FlipLR method) (deeptrack.augmentations.FlipUD method) (deeptrack.augmentations.PreLoad method) (deeptrack.features.Branch method) (deeptrack.features.ConditionalSetFeature method) (deeptrack.features.ConditionalSetProperty method) (deeptrack.features.Duplicate method) (deeptrack.features.Feature method) (deeptrack.features.Label method) (deeptrack.features.Lambda method) (deeptrack.features.LoadImage method) (deeptrack.features.Probability method) (deeptrack.math.Clip method) (deeptrack.math.NormalizeMinMax method) (deeptrack.models.ModelFeature method) (deeptrack.noises.Add method) (deeptrack.noises.Gaussian method) (deeptrack.noises.Poisson method) (deeptrack.optics.Brightfield method) (deeptrack.optics.Fluorescence method) (deeptrack.optics.IlluminationGradient method) (deeptrack.optics.Microscope method) (deeptrack.scatterers.Ellipse method) (deeptrack.scatterers.Ellipsoid method) (deeptrack.scatterers.PointParticle method) (deeptrack.scatterers.Sphere method) (deeptrack.sequences.Sequence method)

get_kwarg_names() (in module deeptrack.utils) get_property() (deeptrack.image.Image method)

H

has_updated_since_last_resolve (deeptrack.properties.Property attribute) (deeptrack.properties.SequentialProperty attribute)

hasmethod() (in module deeptrack.utils) HorizontalComa (class in deeptrack.aberrations) HorizontalTilt (class in deeptrack.aberrations)

I

IlluminationGradient (class in deeptrack.optics) Image (class in deeptrack.image)

initializer (deeptrack.properties.SequentialProperty attribute) isiterable() (in module deeptrack.utils)

L

Label (class in deeptrack.features)

Lambda (class in deeptrack.features) LoadImage (class in deeptrack.features)

M

merge_properties_from() (deeptrack.image.Image method)

Microscope (class in deeptrack.optics) ModelFeature (class in deeptrack.models)

N

nd_binary_crossentropy() (in module deeptrack.losses) nd_kl_divergence() (in module deeptrack.losses) nd_mean_absolute_error() (in module deeptrack.losses) nd_mean_absolute_percentage_error() (in module deeptrack.losses) nd_mean_squared_error() (in module deeptrack.losses)

nd_mean_squared_logarithmic_error() (in module deeptrack.losses) nd_poisson() (in module deeptrack.losses) nd_squared_hinge() (in module deeptrack.losses) Noise (class in deeptrack.noises) NormalizeMinMax (class in deeptrack.math)

O

ObliqueAstigmatism (class in deeptrack.aberrations) ObliqueTrefoil (class in deeptrack.aberrations)

Offset (in module deeptrack.noises) Optics (class in deeptrack.optics)

P

pad_image_to_fft() (in module deeptrack.image) Piston (class in deeptrack.aberrations) plot() (deeptrack.features.Feature method) PointParticle (class in deeptrack.scatterers) Poisson (class in deeptrack.noises)

PreLoad (class in deeptrack.augmentations) Probability (class in deeptrack.features) properties (deeptrack.features.Feature attribute) (deeptrack.image.Image attribute) Property (class in deeptrack.properties) PropertyDict (class in deeptrack.properties)

R

resolve() (deeptrack.features.Feature method)

RNN (class in deeptrack.models) rnn (in module deeptrack.models)

S

sample() (deeptrack.features.Feature method) (deeptrack.properties.Property method) (deeptrack.properties.PropertyDict method) sampling_rule (deeptrack.properties.Property attribute) (deeptrack.properties.SequentialProperty attribute) Scatterer (class in deeptrack.scatterers) Sequence (class in deeptrack.sequences)

Sequential() (in module deeptrack.sequences) SequentialProperty (class in deeptrack.properties) sigmoid() (in module deeptrack.losses) Sphere (class in deeptrack.scatterers) SphericalAberration (class in deeptrack.aberrations) StructuralFeature (class in deeptrack.features) summary() (deeptrack.models.ModelFeature method)

T

Trefoil (class in deeptrack.aberrations)

U

UNet (class in deeptrack.models) unet (in module deeptrack.models) update() (deeptrack.features.Duplicate method) (deeptrack.features.Feature method) (deeptrack.properties.Property method) (deeptrack.properties.PropertyDict method) (deeptrack.properties.SequentialProperty method) (deeptrack.sequences.Sequence method)

V

VerticalComa (class in deeptrack.aberrations)

VerticalTilt (class in deeptrack.aberrations)

W

weighted_crossentropy() (in module deeptrack.losses)

Z

Zernike (class in deeptrack.aberrations)